DreEX6033535 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51968023-51969216:+
Coord C1 exon
chr1:51968023-51968194
Coord A exon
chr1:51968529-51968660
Coord C2 exon
chr1:51969077-51969216
Length
132 bp
Sequences
Splice sites
3' ss Seq
GCATTTTCTTGCTTTTTCAGGTC
3' ss Score
12.57
5' ss Seq
CATGTACGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
CTGTGTGCATTGAGGAAGAGCCAGCCCATATAGATCCTGGTGTTTACATCGAGAACCTGATGAAGATCTACAGCAATGGTAAAGTGGCAGTGGACGGTTTGACTCTGGGCTTTTATGAGGGCCAGATCACTTCTTTCCTTGGCCACAACGGCGCTGGAAAAACCACAACCAT
Seq A exon
GTCAATCCTCACCGGCCTGTTTCCACCGACTTCTGGCACTGCGTACATCCAGGGCAAAGACATCCGCACAGACCTGAATGCCATCCGCCAAAACCTGGGCGTCTGTCCTCAGCATAACGTCCTGTTCAGCAT
Seq C2 exon
GCTGACCGTGGAGGAGCACATCTGGTTTTATGCGCGTCTGAAGGGTTTGTCTGCGGAGAAGGTGAAGTCTGAGATGGAGCAGATCGTGATGGACCTCGGCCTTCCTCATAAACGCACATCTCGCTCCAACCAGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635-'21-21,'21-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.104
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.6=46.6)
A:
PF0000522=ABC_tran=FE(30.3=100)
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCATTGAGGAAGAGCCA
R:
TCAGACTTCACCTTCTCCGCA
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]