BtaEX6035681 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96309301-96311915:-
Coord C1 exon
chr8:96311744-96311915
Coord A exon
chr8:96310310-96310441
Coord C2 exon
chr8:96309301-96309443
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTTTCACATTTTTTCCTCAGGTC
3' ss Score
10.99
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TCTGCATGGAGGAGGAACCCACCCATCTGAAACTGGGTGTGTCCATTCAGAACCTGATGAAGGTTTACCGGGATGGCATGAAGGTGGCTGTGGATGGCCTGGCCTTGAATTTCTACGAGGGGCAGATCACCTCCTTCCTGGGCCACAATGGAGCTGGCAAGACCACCACCAT
Seq A exon
GTCCATCCTAACTGGGTTGTTCCCTCCTACCTCGGGCACTGCCTACATCCTAGGGAAAGACATACGCTCCGAGATGAGCACCATCCGGCAGAACCTGGGGGTCTGTCCCCAGCATAACGTGCTGTTTGACAT
Seq C2 exon
GCTGACTGTCGAGGAGCACATTTGGTTCTATGCCCGCCTGAAAGGGCTCTCCGAGAAGCATGTGAAAGCTGAGATGGAGCAGATGGCCTTGGATGTTGGGTTGCCGCCCAGCAAACTGAAAAGCAAAACAAGTCAGCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'26-28,'26-27,27-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.5=46.6)
A:
PF0000522=ABC_tran=FE(30.1=100)
C2:
PF0000522=ABC_tran=FE(32.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCATCTGAAACTGGGTG
R:
CAACATCCAAGGCCATCTGCT
Band lengths:
252-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]