MmuEX6093481 @ mm9
Exon Skipping
Gene
ENSMUSG00000015243 | Abca1
Description
ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607]
Coordinates
chr4:53088319-53090986:-
Coord C1 exon
chr4:53090815-53090986
Coord A exon
chr4:53089763-53089894
Coord C2 exon
chr4:53088319-53088461
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCTGTTATTCTTGTCCTCAGGTC
3' ss Score
11.34
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TCTGCATGGAAGAGGAACCCACTCATCTGAGGCTGGGGGTGTCCATTCAGAACCTGGTGAAGGTTTACCGAGATGGCATGAAGGTTGCTGTGGATGGCTTGGCGCTCAACTTTTACGAAGGCCAGATTACCTCCTTCCTGGGCCACAATGGAGCAGGGAAGACCACCACCAT
Seq A exon
GTCAATACTGACTGGGCTGTTTCCCCCAACTTCTGGCACGGCCTACATCCTGGGGAAGGACATTCGCTCGGAGATGAGCTCCATCCGGCAGAACCTGGGAGTCTGTCCCCAGCATAATGTGCTGTTTGACAT
Seq C2 exon
GCTGACTGTCGAAGAGCACATCTGGTTCTATGCGCGCCTAAAGGGGCTCTCAGAGAAGCACGTGAAAGCAGAGATGGAGCAGATGGCCCTGGATGTTGGCTTACCCCCGAGCAAGCTGAAAAGCAAAACGAGTCAGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015243-'20-20,'20-19,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.5=46.6)
A:
PF0000522=ABC_tran=FE(30.1=100)
C2:
PF0000522=ABC_tran=FE(32.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCATGGAAGAGGAACCCAC
R:
CCATCTCTGCTTTCACGTGCT
Band lengths:
248-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: