GgaEX0022625 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54569715-54571193:-
Coord C1 exon
chrZ:54571022-54571193
Coord A exon
chrZ:54570351-54570482
Coord C2 exon
chrZ:54569715-54569854
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTGTTGTCTTTGTTCTTCAGGTC
3' ss Score
11.83
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
TCTGCAAGGAGGAAGAGCCTATGCATCTGAGTCTTGGTGTCTCCATCCAGAACCTGGTGAAGGTTTATCGTGATGGCAAGAAAGTTGCTGTGGATGGTCTCACACTGAATTTCTATGAAGGGCAGATCACATCATTTCTGGGGCATAACGGAGCAGGGAAAACCACTACCAT
Seq A exon
GTCCATCTTGACTGGCTTATTCCCTCCTACTTCTGGTACTGCCTTCATCCTGGGTAAAGATATCCGCTCAGAGCTCAGCACCATCAGGCAAAACTTGGGTGTCTGTCCACAACACAACGTGCTGTTTGATTT
Seq C2 exon
GCTGACTGTGGAAGAGCACATCTGGTTCTATGCTCGGCTCAAAGGGTTGCCGGAAAAGAAGGTAAAAGAGGAAATGGAGCAGATGGCAATGGACGTTGGTTTGCCTCACAAACTGAAAGCCAGGACAAGCAAACTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433_MULTIEX6-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.6=46.6)
A:
PF0000522=ABC_tran=FE(30.3=100)
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTCTCCATCCAGAACCT
R:
TGAGGCAAACCAACGTCCATT
Band lengths:
246-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]