DreEX6056969 @ danRer10
Exon Skipping
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6179823-6180815:+
Coord C1 exon
chr14:6179823-6179997
Coord A exon
chr14:6180452-6180583
Coord C2 exon
chr14:6180676-6180815
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTGATCTTCAATGTTTTTAGGTC
3' ss Score
9.5
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
CTGTTTGCATTGAAGAGGAACCTACTCACCTTAAACTGGGAGTTTACATTGAGAATCTGGTGAAGGTCTATCGCCATGGTAAAAAGCTAGCCGTGGATGGGTTGACACTTGGTTTTCATGAAGGTCAGATAACATCCTTCCTGGGTCACAACGGAGCTGGCAAAACCACCACCAT
Seq A exon
GTCTATCCTCACAGGCCTTTTCCCTCCCACCTCTGGCACTGCATACATCATGGGCAAAGACATTCGTTCAGAGCTGAGTTCAATCAGGCAGAGCCTCGGAGTGTGTCCACAACACAATGTCCTCTTCAGCAT
Seq C2 exon
GTTGACAGTAGAAGAGCACATCTGGTTCTATGCTCGCCTGAAGGGTCTGTCTGAGGAAGAAGTGAAAGCTGAGATGGAGCAGATCCTGAGTGACACTGGCCTTCCGCACAAACGCAAATCCAGAACCAGCCAGTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009-'23-26,'23-25,24-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.208
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.6=45.8)
A:
PF0000522=ABC_tran=FE(30.3=100)
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTGAAGGTCTATCGCCA
R:
ACTGGCTGGTTCTGGATTTGC
Band lengths:
254-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]