BtaEX6040225 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45171088-45172009:+
Coord C1 exon
chr7:45171088-45171259
Coord A exon
chr7:45171640-45171771
Coord C2 exon
chr7:45171870-45172009
Length
132 bp
Sequences
Splice sites
3' ss Seq
TGAGACCCCTGCACCTGCAGGTC
3' ss Score
7.64
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
TGCTGGTGGAGGAGGCGCCCCCTGGCCTGATTCCGGGGGTCTCCATACGCGGCCTGGAAAAGCGCTTTGCTGGCAACCCGCAGCCGGCGCTGTGCGGACTCAGCCTGGACTTCTACCAGGGCCACATTACCGCCTTCCTGGGTCACAATGGGGCTGGCAAAACGACCACAAT
Seq A exon
GTCCATCCTGAGTGGCCTCTTTCCACCCACGGCTGGCTCCGCCTCTGTCCTGGGCCACGACGTCCGGACCAGCATGGTAGCCATCCGGCCCTGCCTGGGTGTCTGCCCGCAGTACAACGTGCTCTTTGACCT
Seq C2 exon
ACTGACTGTGGATGAGCACATCTGGTTCTATGGGCGGTTGAAGGGTCTGAGCGCAGCTGCCGTGGGTCCCGAGCAGGACCGGCTGCTGCAGGACATGGGGCTGATCCCCAAGAGGCATGCACAGACTCATCACCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766-'19-21,'19-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.6=46.6)
A:
PF0000522=ABC_tran=FE(30.3=100)
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATACGCGGCCTGGAAAAG
R:
GAGTCTGTGCATGCCTCTTGG
Band lengths:
258-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]