MmuEX6052346 @ mm10
Exon Skipping
Gene
ENSMUSG00000025348 | Itga7
Description
integrin alpha 7 [Source:MGI Symbol;Acc:MGI:102700]
Coordinates
chr10:128933818-128939347:+
Coord C1 exon
chr10:128933818-128934194
Coord A exon
chr10:128939040-128939167
Coord C2 exon
chr10:128939268-128939347
Length
128 bp
Sequences
Splice sites
3' ss Seq
GCCCTTGTCCTACCCTACAGGCT
3' ss Score
9.67
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
Exon sequences
Seq C1 exon
TAGCTGGTCCTGGGGCAGCAGCGGGAAGGGACTGAAGAGGGGTGCTGAGGTGAAAGATTGGAAGACCCGGAAAGATCAGCTAGATTTCGGAAACCAGAAACACCCTCGGGGAGACCTGGGGCTCCCGGCGCGCGACGATTTCCTCGCACTAGCTGGGAGAGCGTTGATCCCATGGCCAGGATTCCGAGGTGCGATTTTCTCCGGCCCCCCGGAATCTACTATCTTATTACTTCCTTGCTCGCTGGACTGTTCTTACCACCGGCTATCGCCTTCAATCTGGATGTGATGGGTGCCATACGCAAGGAGGGAGAACCCGGCAGCCTATTCGGCTTTTCGGTGGCCCTGCACCGACAATTACAGCCCCGACCCCAGAGCTG
Seq A exon
GCTGCTGGTGGGCGCTCCCCAGGCCCTGGCTCTTCCTGGACAGCAGGCAAACCGCACCGGAGGCCTCTTTGCTTGTCCCCTGAGCCTAGAGGAGACAGATTGCTACAGAGTGGACATTGACAGGGGAG
Seq C2 exon
CTAACGTGCAGAAGGAGAGCAAGGAGAACCAATGGCTGGGAGTCAGTGTCCGGAGCCAGGGGCCAGGGGGCAAGATTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025348-'1-5,'1-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATTCCGAGGTGCGATTT
R:
CTGACTCCCAGCCATTGGTTC
Band lengths:
247-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types