RnoEX0045049 @ rn6
Exon Skipping
Gene
ENSRNOG00000007905 | Itga7
Description
integrin subunit alpha 7 [Source:RGD Symbol;Acc:71022]
Coordinates
chr7:3355116-3360754:+
Coord C1 exon
chr7:3355116-3355507
Coord A exon
chr7:3360453-3360580
Coord C2 exon
chr7:3360675-3360754
Length
128 bp
Sequences
Splice sites
3' ss Seq
GCCTTTGTCCTACCCTACAGGCT
3' ss Score
10.36
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
Exon sequences
Seq C1 exon
GAGTTGTATTTAGCTGGTCCTGGGGCAGTGGAGGGGAGGACTAAAGAGGGGTGCCGAGGTGAAAGATTGAAAGACCATAAAAGATCAGCTAGATTTCGGAAACCAGAAACACCCCCGGTGAGACCTGGGGCTCCGGGCCGCGACGATTTCCTCGCATTAGCAGAGAGAGCGCGGAGCGTTGGTCCCATGGCCAGGATTCCGAGGTGCGATTTCCTCGGGCTCCCCGGAATTTGCTACCTTCTTAGTTTCTTGCTTGCCGGACTGCTCTTACCACGGGCTAGCGCCTTCAATCTGGATGTGATGGGTGCCATACGCAAGGAGGGAGAACCTGGCAGCTTATTCGGCTTTTCGGTGGCCCTACACCGACAATTACAGCCCCGACCCCAGAGCTG
Seq A exon
GCTGCTGGTGGGTGCCCCCCAGGCCCTGGCTCTTCCCGGACAGCAGGCAAATCGCACGGGAGGCCTCTTTGCTTGTCCCCTGAGCCTAGAGGAGACAGACTGCTACAGAGTGGACATCGACAGGGGAG
Seq C2 exon
CTAATGTGCAGAAGGAAAGCAAGGAGAACCAGTGGCTGGGAGTCAGCGTGCGGAGCCAGGGAGCCGGGGGCAAGGTTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007905-'1-2,'1-1,6-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTCCCATGGCCAGGATTC
R:
GCCACTGGTTCTCCTTGCTTT
Band lengths:
250-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]