HsaEX0032371 @ hg38
Exon Skipping
Gene
ENSG00000135424 | ITGA7
Description
integrin subunit alpha 7 [Source:HGNC Symbol;Acc:HGNC:6143]
Coordinates
chr12:55702872-55712134:-
Coord C1 exon
chr12:55712063-55712134
Coord A exon
chr12:55703051-55703178
Coord C2 exon
chr12:55702872-55702951
Length
128 bp
Sequences
Splice sites
3' ss Seq
GCCCCTGCCCCATCTTGCAGGCT
3' ss Score
10.67
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
Exon sequences
Seq C1 exon
CCACTCCCATGGTTCAAGCTTTGACTACAACCAGAATTCAGAGGCAGGCAGAAGGATTCCAGTGCTGGAGAG
Seq A exon
GCTGCTGGTGGGTGCTCCCCAGGCCCTGGCTCTTCCTGGGCAGCAGGCGAATCGCACTGGAGGCCTCTTCGCTTGCCCGTTGAGCCTGGAGGAGACTGACTGCTACAGAGTGGACATCGACCAGGGAG
Seq C2 exon
CTGATATGCAAAAGGAAAGCAAGGAGAACCAGTGGTTGGGAGTCAGTGTTCGGAGCCAGGGGCCTGGGGGCAAGATTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135424-'4-14,'4-13,9-14
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.148
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTCCCATGGTTCAAGCTT
R:
AACAATCTTGCCCCCAGG
Band lengths:
152-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development