BtaEX6022449 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012897 | ITGA7
Description
integrin, alpha 7 [Source:HGNC Symbol;Acc:HGNC:6143]
Coordinates
chr5:57874054-57879070:+
Coord C1 exon
chr5:57874054-57874259
Coord A exon
chr5:57878763-57878890
Coord C2 exon
chr5:57878991-57879070
Length
128 bp
Sequences
Splice sites
3' ss Seq
GCCCCTCCTCCATCATGCAGGCT
3' ss Score
8.68
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATGGCGGGAACTCCGGGCCGCGATCCTTGGGGGACCCCTGGGATTTGTTACCTTTTTGGCTCCCTGCTCGCCGGACTGCTCTTCCCAGGGGCTGCCGCCTTCAATCTGGACGTGATGGGCGCCCTCCGCAAGGAGGGCGAGCCGGGGAGCCTCTTTGGCTTTTCGGTGGCTCTGCACCGGCAGTTGCAGCCCCGACCCCAGAGCTG
Seq A exon
GCTGCTGGTGGGCGCTCCTCAGGCTCTGGCCCTGCCAGGGCAGCAGGCAAATCGCACTGGAGGTCTCTTCGCTTGCCCCCTGAGCCTGGAAGAGACTGACTGCTACAGAGTGGACATCGACCAGGGAG
Seq C2 exon
CTGATGTGCAGAAGGAGAGTAAGGAGAACCAGTGGTTGGGAGTCAGTGTTCGGAGCCAGGGGCCTGGGGGCAAGATTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012897-'3-3,'3-1,7-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=0.000 C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCCTGGGATTTGTTACC
R:
AACAATCTTGCCCCCAGG
Band lengths:
255-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]