MmuEX6052346 @ mm9
Exon Skipping
Gene
ENSMUSG00000025348 | Itga7
Description
integrin alpha 7 [Source:MGI Symbol;Acc:MGI:102700]
Coordinates
chr10:128370869-128376403:+
Coord C1 exon
chr10:128370869-128371250
Coord A exon
chr10:128376096-128376223
Coord C2 exon
chr10:128376324-128376403
Length
128 bp
Sequences
Splice sites
3' ss Seq
GCCCTTGTCCTACCCTACAGGCT
3' ss Score
9.67
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
Exon sequences
Seq C1 exon
GTACTTAGCTGGTCCTGGGGCAGCAGCGGGAAGGGACTGAAGAGGGGTGCTGAGGTGAAAGATTGGAAGACCCGGAAAGATCAGCTAGATTTCGGAAACCAGAAACACCCTCGGGGAGACCTGGGGCTCCCGGCGCGCGACGATTTCCTCGCACTAGCTGGGAGAGCGTTGATCCCATGGCCAGGATTCCGAGGTGCGATTTTCTCCGGCCCCCCGGAATCTACTATCTTATTACTTCCTTGCTCGCTGGACTGTTCTTACCACCGGCTATCGCCTTCAATCTGGATGTGATGGGTGCCATACGCAAGGAGGGAGAACCCGGCAGCCTATTCGGCTTTTCGGTGGCCCTGCACCGACAATTACAGCCCCGACCCCAGAGCTG
Seq A exon
GCTGCTGGTGGGCGCTCCCCAGGCCCTGGCTCTTCCTGGACAGCAGGCAAACCGCACCGGAGGCCTCTTTGCTTGTCCCCTGAGCCTAGAGGAGACAGATTGCTACAGAGTGGACATTGACAGGGGAG
Seq C2 exon
CTAACGTGCAGAAGGAGAGCAAGGAGAACCAATGGCTGGGAGTCAGTGTCCGGAGCCAGGGGCCAGGGGGCAAGATTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025348-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATTCCGAGGTGCGATTT
R:
CTGACTCCCAGCCATTGGTTC
Band lengths:
247-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: