MmuEX6053508 @ mm9
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47681228-47713094:-
Coord C1 exon
chr15:47712892-47713094
Coord A exon
chr15:47689336-47689527
Coord C2 exon
chr15:47681228-47681366
Length
192 bp
Sequences
Splice sites
3' ss Seq
GTCTTTCTATCTTTTGATAGGTT
3' ss Score
10.63
5' ss Seq
TAGGTATGA
5' ss Score
6.99
Exon sequences
Seq C1 exon
CCTACAGTTTCTTGCTTTCGATACAGAAGCCTCACATGATATACTCCGAGTTTGGGATGGTCCACCAGAAAACGAGATGCTATTAAAGGAAGTTAGTGGATCTCTTATTCCTGATGGAATTCACAGCACCCTCAACATAGTGACTATCCAATTTGATACGGACTTTTATATCAGCAAATCTGGATTCGCAATTCAGTTTTCAA
Seq A exon
GTTCAGTTGCAACTGCCTGTCGTGATCCAGGAGTCCCCATGAATGGGACACGGAATGGTGACGGACGAGAACCTGGGGACACTGTTGTCTTTCAGTGTGATCCTGGATATGAGCTTCAAGGACAAGAAAGAATAACCTGCATTCAGGTAGAAAATCGATACTTCTGGCAGCCCAGCCCACCAGTCTGTATAG
Seq C2 exon
CACCTTGTGGAGGCAATTTAACAGGATCTTCAGGCTTTATCCTTTCGCCAAACTTCCCTCATCCATACCCACACAGCAGGGACTGTGATTGGACCATCAGTGTCAATACGGACTATGTTATCTCCTTGGCCTTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'42-31,'42-30,43-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.277 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(61.7=95.7)
A:
PF0008415=Sushi=WD(100=87.7)
C2:
PF0043115=CUB=PU(41.5=93.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGAGTTTGGGATGGTCCA
R:
GTCCAATCACAGTCCCTGCTG
Band lengths:
254-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: