RnoEX6032189 @ rn6
Exon Skipping
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:86998824-87029710:-
Coord C1 exon
chr7:87029508-87029710
Coord A exon
chr7:87006335-87006526
Coord C2 exon
chr7:86998824-86998962
Length
192 bp
Sequences
Splice sites
3' ss Seq
GCCTTTCTATCTTTTGATAGGTT
3' ss Score
10.87
5' ss Seq
TAGGTATGA
5' ss Score
6.99
Exon sequences
Seq C1 exon
CCTACAGTTTCTCGCTTTCGATACAGAAGCATCCCATGATATACTTCGAGTTTGGGATGGTCCGCCAGAAAACGAGATGCTATTAAAGGAAGTTAGTGGATCTCTTATTCCTGATGGAATTCATAGCACTCTCAACATAGTGACTATCCAGTTTGATACGGACTTTTATATCAGCAAATCTGGATTTGCCATTCAGTTCTCAA
Seq A exon
GTTCAGTTGCAACTGCCTGTCGTGATCCGGGAGTCCCCATGAATGGGACACGCAATGGGGACGGACGAGAACCTGGGGACACTGTTGTCTTCCAGTGTGATCCTGGATATGAGCTTCAAGGACAAGAAAGAATAACCTGCATCCAGGTAGAAAATCGATACTTCTGGCAGCCCAGCCCACCAGTCTGTATAG
Seq C2 exon
CACCTTGTGGAGGCAATTTAACAGGATCTTCAGGCTTTATCCTTTCGCCAAACTTCCCTCATCCGTACCCACACAGCAGGGACTGTGACTGGACCGTCAGTGTCAATGCGGACTATGTTATCTCCTTGGCTTTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937-'25-42,'25-33,30-42=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCTATCTTCTTTTGGTT
R:
CGAGAGGGAAGATAACAGAGGAGA
Band lengths:
202-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]