BtaEX6062836 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038281 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr14:54053086-54086226:+
Coord C1 exon
chr14:54053086-54053288
Coord A exon
chr14:54074830-54075021
Coord C2 exon
chr14:54086082-54086226
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCTATTTGTTCATAGGTT
3' ss Score
10.23
5' ss Seq
TAGGTATGA
5' ss Score
6.99
Exon sequences
Seq C1 exon
CCTACAGTTTCTTGCTTTTGATACGGAAGCATCACATGATATACTCCGAGTTTGGGATGGTCCGCCTGAAAACGAGATGCTTTTAAAGGAAATCAGTGGGTCTCTGATTCCCGAAGGAATCCATAGCACTCTCAACGTAGTGACCATTCAGTTCGACACAGATTTTTATATCAGCAAATCTGGATTTGCAATTCAGTTTTCAA
Seq A exon
GTTCTGTTGCCACTGCGTGTCGTGACCCAGGGGTTCCCATGAACGGAACTCGAAATGGAGATGGACGAGAACCTGGAGACACTGTGGTTTTTCAGTGTGACCCAGGATATGAACTTCAAGGAGAGGAAAGAATAACCTGCATTCAGGTAGAAAATCGATACTTCTGGCAGCCCAGCCCACCAGTTTGTATAG
Seq C2 exon
TTAAAGCACCCTGTGGAGGCAATTTAACAGGATCTTCAGGATTTATTCTTTCGCCAAACTTCCCTCATCCATATCCCCATAGTAGGGACTGTGACTGGACCATCACCGTCAATGCAGACTATGTTATCTCCTTGGCATTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038281-'22-23,'22-22,23-23=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.277 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(61.7=95.7)
A:
PF0008415=Sushi=WD(100=87.7)
C2:
PF0043115=CUB=PU(41.5=89.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCTGAAAACGAGATGCTT
R:
TGGTCCAGTCACAGTCCCTAC
Band lengths:
244-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]