HsaEX6081988 @ hg19
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:19291]
Coordinates
chr8:113518920-113563102:-
Coord C1 exon
chr8:113562900-113563102
Coord A exon
chr8:113529263-113529454
Coord C2 exon
chr8:113518920-113519058
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTGTCTCTGTCTTTTGATAGGTT
3' ss Score
10.99
5' ss Seq
TAGGTATGA
5' ss Score
6.99
Exon sequences
Seq C1 exon
CTTGCAGTTTCTTGCTTTTGATACGGAAGCATCACATGATATACTCCGAGTCTGGGACGGTCCACCAGAAAATGATATGCTTTTAAAGGAAATTAGTGGATCTCTTATTCCTGAAGGAATTCATAGCACCCTCAATATAGTAACCATCCAGTTTGACACGGATTTTTATATTAGCAAATCTGGATTTGCAATTCAGTTTTCAA
Seq A exon
GTTCTGTTGCCACTGCGTGTCGTGACCCAGGGGTCCCCATGAATGGGACTCGAAATGGGGATGGAAGAGAACCTGGGGACACTGTTGTTTTTCAATGTGACCCAGGATATGAACTTCAAGGAGAGGAAAGAATAACCTGCATTCAGGTAGAAAATCGGTACTTCTGGCAGCCCAGCCCACCAGTCTGTATAG
Seq C2 exon
CACCCTGTGGAGGCAATTTAACAGGATCTTCAGGCTTTATTCTTTCACCAAACTTCCCTCATCCATATCCGCATAGCAGAGACTGTGACTGGACTATCACCGTCAATGCAGACTATGTTATCTCCTTGGCGTTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-'34-35,'34-34,35-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.277 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(61.7=95.7)
A:
PF0008415=Sushi=WD(100=87.7)
C2:
PF0043115=CUB=PU(41.5=93.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGGTCCACCAGAAAATG
R:
AGTCCAGTCACAGTCTCTGCT
Band lengths:
245-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)