DreEX6042857 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47901132-47905976:-
Coord C1 exon
chr16:47905774-47905976
Coord A exon
chr16:47903152-47903343
Coord C2 exon
chr16:47901132-47901270
Length
192 bp
Sequences
Splice sites
3' ss Seq
CATCATTTCCTATTATGCAGGTT
3' ss Score
7.57
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
TTTGCAGTTCCTGGCATTTGATACTGAAGCATCGCATGATATCCTGAAGGTTTGGGATGGACACCCGGAAAATGAGATGGCGCTGAAGGAAGTGAGCGGTTCACTGTTACCTGACGGCATTCACAGCACTCTCAACGTGGTCACCATCCAGTTTGAGACTGACTTCTACATTAGCAAATCTGGTTTTGCCATTGACTTCTCAA
Seq A exon
GTTCAGTTGCGACCGCCTGCAGGGATCCTGGGACGCCCATGAATGGCAGCCGCAGCGGAGAAGGGAAGGAACCAGGCGACACCATGACCTTCGCGTGTGATCCGGGCTACGACCTCCAAGGCGAACCCAGAATCACCTGCATTCAGGTGGACAACAGGTTCTACTGGCAGCCCAGCCCGCCAACCTGCATTG
Seq C2 exon
CTCCTTGTGGTGGAAACATTACTGGCTCATCTGGATTCATACTGTCTCCGAATTTCCCTCATCCGTATCCACACAGCAAGGACTGCGACTGGTTCATCACGGTTCACCCTGACTATGTCATTTCCTTGGCTTTTATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'28-29,'28-28,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.308 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(61.7=95.7)
A:
PF0008415=Sushi=WD(100=87.7)
C2:
PF0043115=CUB=PU(41.5=93.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCCGGAAAATGAGATGGC
R:
GGGTGAACCGTGATGAACCAG
Band lengths:
252-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]