GgaEX6022114 @ galGal3
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139132922-139144326:-
Coord C1 exon
chr2:139144124-139144326
Coord A exon
chr2:139136133-139136324
Coord C2 exon
chr2:139132922-139133060
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCCTCTCTCTGATAGGTT
3' ss Score
12.16
5' ss Seq
TAGGTATGC
5' ss Score
7.53
Exon sequences
Seq C1 exon
CCTCCAGTTTCTTGCTTTTGATACTGAGGCATCACATGATATTCTACGAGTTTGGGATGGACCACCTGAGAATGAGATGTTACTCAAGGAAATTAGTGGATCTCTAGTTCCTGAAGGCATTCACAGTACACTCAACATAGTAACAATCCAGTTTGACACAGATTTTTATATCAGCAAATCTGGGTTTGCCATACAGTTTTCAA
Seq A exon
GTTCTGTAGCTACTGCCTGCCGTGATCCTGGTGTCCCCATGAATGGAACTAGAAATGGGGATGGAAGAGAACCCGGAGACACTGTGATTTTTCAGTGTGACCCTGGATATGAATTGCAAGGAGATGAGAGGATAACCTGCATTCAGGTAGAAAATCGGTACTTCTGGCAGCCCAACCCACCAGTCTGCATAG
Seq C2 exon
CTCCCTGTGGAGGAAACCTGACTGGCTCATCAGGTTTTATACTTTCACCAAACTTCCCACATCCTTATCCCCACAGCCGAGATTGTGACTGGACTATCACTGTTAATAATGACTATGTTATATCACTAGCATTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'27-28,'27-27,28-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.262 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(61.7=95.7)
A:
PF0008415=Sushi=WD(100=87.7)
C2:
PF0043115=CUB=PU(41.5=93.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGGGATGGACCACCTGA
R:
GTCCAGTCACAATCTCGGCTG
Band lengths:
249-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]