MmuEX6064506 @ mm9
Exon Skipping
Gene
ENSMUSG00000040146 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:MGI Symbol;Acc:MGI:1918996]
Coordinates
chr9:21792490-21793897:-
Coord C1 exon
chr9:21793809-21793897
Coord A exon
chr9:21793293-21793403
Coord C2 exon
chr9:21792490-21792719
Length
111 bp
Sequences
Splice sites
3' ss Seq
GAGCCCGCCTCCACATCCAGGCG
3' ss Score
5.14
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CGCTGGCCCTTCCGCTTCACTCAGCGGCGCCAGGGAGCAGGACGGGCACCGGGGCCATGGAGAGGACAGCGGGCAAAGAGCTGGCCCTG
Seq A exon
GCGCCGCTGCAGGACTGGGGCGAGGAGACCGAGGATGGCGCCGTGTACAGCGTCTCCCTGCGGCGGCAGCGCAGCCAGCGCTCGACCCCAGAGAGGTCTGGAGAAGGCCAG
Seq C2 exon
ACCCCCATCCCGGCTACCGACACCTTCCTTCATTACCGAACCAGCAAGGTGCGGGCGCTGAGGGCCGCCCGACTGGAGCGGCTGGTGCATGAGTTGGTGTCCGGAGACCGCGAGCAGGATCCTGGCTTCGTGCCTGCCTTCCTGGCCACCCACCGGGCCTTTGTACCCACAGCCCGCGTTTTGGGTTTTCTGCTACCCCCGCCACCGCCGCCGCCACCACCTCCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040146-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=0.873 C2=0.403
Domain overlap (PFAM):
C1:
NO
A:
PF0061815=RasGEF_N=PU(19.0=46.2)
C2:
PF0061815=RasGEF_N=PU(53.2=75.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCCGCTTCACTCAGC
R:
GCTGTGGGTACAAAGGCCC
Band lengths:
256-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: