BtaEX6038205 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17021584-17022975:-
Coord C1 exon
chr7:17022940-17022975
Coord A exon
chr7:17022402-17022515
Coord C2 exon
chr7:17021584-17021807
Length
114 bp
Sequences
Splice sites
3' ss Seq
GAGCCCGCCTCCGTGTCCAGGCG
3' ss Score
6.48
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATGGAGCGCACAGCAGCGGGCAAGGAGCTTGCCCTG
Seq A exon
GCGCCGCTGCAGGACTGGGGAGAGGAGACCGAGGACGGCGCGGTGTACAGTGTCTCCCTGCGGCGGCAGCGCAGTCAGCGTTCGAGTCCGGGGGCAGGGCCCCGGGTCACCCAG
Seq C2 exon
GCCCTCAACCCCGCGCCCGACACCTTCCTTCATTACCGCACCAGCAAGGTGCGGGCGCTGAGGGCGGCGCGGCTGGAGCGGCTAGTGAGGGAGTTGGTGTCCGGAGATCCCGAGCAGGACCCAGGCTTCGTGCCCGCCTTTCTGGCCACCCACCGGGCCTTCGTGCCTACTGGCCGCGTGCTGGGCCTCCTCCTGCCACCACCTGCGCCGCCACTCCCGCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.763 C2=0.227
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061815=RasGEF_N=PU(52.3=74.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGGGCAAGGAGCTTG
R:
CAGGTGGTGGCAGGAGGAG
Band lengths:
228-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]