MmuEX6064506 @ mm10
Exon Skipping
Gene
ENSMUSG00000040146 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:MGI Symbol;Acc:MGI:1918996]
Coordinates
chr9:21988046-21989434:-
Coord C1 exon
chr9:21989365-21989434
Coord A exon
chr9:21988849-21988959
Coord C2 exon
chr9:21988046-21988275
Length
111 bp
Sequences
Splice sites
3' ss Seq
GAGCCCGCCTCCACATCCAGGCG
3' ss Score
5.14
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTCAGCGGCGCCAGGGAGCAGGACGGGCACCGGGGCCATGGAGAGGACAGCGGGCAAAGAGCTGGCCCTG
Seq A exon
GCGCCGCTGCAGGACTGGGGCGAGGAGACCGAGGATGGCGCCGTGTACAGCGTCTCCCTGCGGCGGCAGCGCAGCCAGCGCTCGACCCCAGAGAGGTCTGGAGAAGGCCAG
Seq C2 exon
ACCCCCATCCCGGCTACCGACACCTTCCTTCATTACCGAACCAGCAAGGTGCGGGCGCTGAGGGCCGCCCGACTGGAGCGGCTGGTGCATGAGTTGGTGTCCGGAGACCGCGAGCAGGATCCTGGCTTCGTGCCTGCCTTCCTGGCCACCCACCGGGCCTTTGTACCCACAGCCCGCGTTTTGGGTTTTCTGCTACCCCCGCCACCGCCGCCGCCACCACCTCCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040146-'0-4,'0-2,1-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.838 C2=0.403
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061815=RasGEF_N=PU(53.2=75.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCCATGGAGAGGACAG
R:
GGCGGGGGTAGCAGAAAAC
Band lengths:
242-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types