RnoEX6034942 @ rn6
Exon Skipping
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22998889-23000455:-
Coord C1 exon
chr8:23000396-23000455
Coord A exon
chr8:22999879-22999989
Coord C2 exon
chr8:22998889-22998942
Length
111 bp
Sequences
Splice sites
3' ss Seq
GAGCCCGCCTCCACGTCCAGGCA
3' ss Score
4.21
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCAGGGAGCAGGACGGGCACCGGGGCCATGGAGAGGACAGCGGGCAAAGAGTTGGCCCTG
Seq A exon
GCACCACTACAGGACTGGGGAGAGGAGACCGAGGATGGCGCCGTGTACAGCGTCTCCCTGCGGCGGCAGCGCAGCCAGCGCTCAACCCCAGAGGGGTCTGGAGACGGCCAG
Seq C2 exon
GGTAGACAGCAAGAGGACAGAAGGACAGGATCTGAACTTCAGCAAGAACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027-'0-3,'0-0,1-3=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=0.873 C2=0.632
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061815=RasGEF_N=FE(16.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCCATGGAGAGGACAG
R:
CTCAGGTTCTTGCTGAAGTTCA
Band lengths:
93-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]