GgaEX1049096 @ galGal4
Exon Skipping
Gene
ENSGALG00000004728 | RGL1
Description
ral guanine nucleotide dissociation stimulator-like 1 [Source:RefSeq peptide;Acc:NP_001026442]
Coordinates
chr8:7641619-7667886:+
Coord C1 exon
chr8:7641619-7641794
Coord A exon
chr8:7642573-7642683
Coord C2 exon
chr8:7667678-7667886
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCCCTTTCCCGGCAGAGC
3' ss Score
11.51
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
CTCCCGCCTCCCGCGCGGAGCGGAGCGGAGCCCAGGGGCCGCGCGGCTCGGGCCGGCCCGCGGCGGCGGCCGCTGACGGGGCGGAGCGGCGGCGTCGGCGCCCGGCGGCTGCGGCATGCCCCGTCGAGGCGCCCGGGAAGGAACTGATAATGAGATTGCCTTGGAACGCTAAAGTG
Seq A exon
AGCTCAATTCAGGACTGGGGTGAAGAGGTGGAAGAGGGAGCTGTTTACCATGTCACCCTGAAAAGAGTGCAGATTCAGCAAGCTGCCAACAAAGGAGCGAGGTGGCTCGGG
Seq C2 exon
GTTGAAGGGGACCAGTTACCTCCGGGACATACTGTCAGCCAGTATGAAACATGTAAGATCAGGACAATAAAGGCTGGAACTTTGGAGAAACTTGTGGAGAACCTTCTGACAGCTTTTGGGGATAATGATTTTACCTACATCAGTATCTTTCTCTCAACATACAGGGGCTTTGCTTCTACTAAGGAAGTACTGGAGCTTCTCCTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004728-'2-14,'2-2,6-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061815=RasGEF_N=PU(44.4=68.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGGGAAGGAACTGATAATG
R:
GCTCCAGTACTTCCTTAGTAGAAGC
Band lengths:
242-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]