BtaEX0030266 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019630 | RGL1
Description
ral guanine nucleotide dissociation stimulator-like 1 [Source:HGNC Symbol;Acc:HGNC:30281]
Coordinates
chr16:66270452-66355569:+
Coord C1 exon
chr16:66270452-66270615
Coord A exon
chr16:66313129-66313239
Coord C2 exon
chr16:66355361-66355569
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTGTCCTGTCTCCTGGCAGAGC
3' ss Score
11.81
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
ATCCGTAATGCCTCCTGCCCGGCTCTTTCAAGATGGAGGAGAAGCCCTTGGGAGAGCCTGCATATGTGGTGTCTAAACTCAAACTTTCCACCAAGGTAGAAAGCACAGGACACTGGCTGGTGGAAGATCATGCTCGGATATGGGAAGTTTTAAAGACAGAGGAG
Seq A exon
AGCTCGATTCAGGACTGGGGTGAAGAGGTAGAGGAAGGAGCTGTTTACCATGTCACCCTCAAGAGAGTCCAGATTCAACAGGCTGCCAATAAAGGAGCGAGATGGCTCGGG
Seq C2 exon
GTCGAAGGGGACCAGCTGCCTCCCGGACACACAGTCAGTCAGTATGAGACGTGTAAGATCAGGACCATAAAAGCTGGCACCTTAGAGAAGCTCGTGGAGAACCTGCTGACGGCTTTTGGGGACAATGACTTTACATATATCAGCATCTTCCTGTCAACATACAGAGGCTTTGCCTCCACTAAAGAAGTGCTGGAGCTGCTGCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019630_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.113
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0061815=RasGEF_N=PU(43.6=67.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGTGGAAGATCATGCTC
R:
CAGCAGCTCCAGCACTTCTTT
Band lengths:
251-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development