HsaEX0053302 @ hg19
Exon Skipping
Gene
ENSG00000143344 | RGL1
Description
ral guanine nucleotide dissociation stimulator-like 1 [Source:HGNC Symbol;Acc:30281]
Coordinates
chr1:183774254-183816908:+
Coord C1 exon
chr1:183774254-183774458
Coord A exon
chr1:183775509-183775619
Coord C2 exon
chr1:183816700-183816908
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTTTATCCCGTCCCTGGCAGAGC
3' ss Score
8.16
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTGGCCCGAGTCGCGCGCACCGGCGGCGGCGGGGGCAGCGCGGCGCGTGTCTGTGCGCTGCGGTCGCTCGGGACCGGGACCGGGGCGAGGCGCCGCGGGGCTGAGCCCAGCAGACATTGCGTTGGCCTCCGAGCAGGGCGCATCATGCAGCGTTCGCGCACCGGAGAGAAAACTGAGAATGAAATTGCTTTGGCAAGCTAAAATG
Seq A exon
AGCTCGATTCAGGACTGGGGTGAAGAGGTAGAGGAAGGAGCTGTTTACCATGTCACCCTCAAAAGAGTCCAGATTCAACAGGCTGCCAATAAAGGAGCAAGATGGCTAGGG
Seq C2 exon
GTTGAAGGGGACCAGCTGCCTCCAGGACACACAGTCAGTCAATATGAAACCTGTAAGATCAGGACCATAAAAGCTGGCACCTTGGAGAAGCTTGTGGAGAACCTGCTGACAGCTTTTGGGGACAATGACTTTACCTATATCAGCATCTTTCTTTCAACGTACAGAGGCTTTGCCTCCACTAAAGAAGTGCTGGAACTACTGCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143344-'3-5,'3-4,4-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.005 C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061815=RasGEF_N=PU(44.9=68.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACCGGAGAGAAAACTGAG
R:
GTCCAGCAGTAGTTCCAGCAC
Band lengths:
256-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)