MmuEX0039582 @ mm10
Exon Skipping
Gene
ENSMUSG00000026482 | Rgl1
Description
ral guanine nucleotide dissociation stimulator,-like 1 [Source:MGI Symbol;Acc:MGI:107484]
Coordinates
chr1:152586407-152625217:-
Coord C1 exon
chr1:152624984-152625217
Coord A exon
chr1:152623818-152623928
Coord C2 exon
chr1:152586407-152586615
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTTATCCTGTCCCTGGCAGAGC
3' ss Score
9.34
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GAGGAGTCTGCTGCCGCGGGCTCCCGGGCTGCCTGCTCGCTGGCCGGCGCTCCTTTGTGGCCCGGTCGCGCGCGGCGGCGGCGGCGGCAGTCGGGCAGCAAGGCGCGTGGGAAGCGCGGGGACCCGGAGCCGGGCCAGAGAGACGCCCCGACCGCCTCGGAGCAGGGCGCACCATGCAGCGTCCGTGTGCCGGAAAGAAAACTGAGAATGAAATTACTTTGGCAAGCTAAAATG
Seq A exon
AGCTCGATTCAGGACTGGGGTGAAGAGGTAGAGGAAGGAGCTGTTTACCATGTCACCCTCAAAAGAGTCCAGATTCAACAGGCGGCCAATAAAGGAGCGAGATGGCTAGGG
Seq C2 exon
GTTGAAGGGGACCAGCTGCCTCCAGGACACACAGTCAGTCAGTACGAGACCTGCAAGATCAGGACCATCAAAGCTGGTACGCTGGAGAAGCTTGTGGAGAACCTGCTGACGGCTTTTGGGGACAATGACTTTACCTACATCAGCATCTTTTTGTCGACATACAGAGGCTTTGCCTCGACTAAGGAAGTGCTGGAGCTGCTGCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026482-'13-23,'13-13,16-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061815=RasGEF_N=PU(43.6=68.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGCCGGAAAGAAAACTG
R:
GCAGCTCCAGCACTTCCTTAG
Band lengths:
250-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types