DreEX0061871 @ danRer10
Exon Skipping
Gene
ENSDARG00000005989 | rgl1
Description
ral guanine nucleotide dissociation stimulator-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1816]
Coordinates
chr8:19274611-19283102:-
Coord C1 exon
chr8:19282918-19283102
Coord A exon
chr8:19277791-19277901
Coord C2 exon
chr8:19274611-19274819
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCTCTTTTTTTCAGAGC
3' ss Score
12.54
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GGGAGGCGAGGGGAGCCGCTGAGACTCCAGACATCCGTGACCGACTGCACTGCTTGAAGGAGAGCTCTGCGGACTATACTTGAAAACATTTCACCCATTTTCTCTGGACTTGGGCTGTGTTCTGATGCCGCTACCGGACGATGAGAGAGGCCCTCACCATGAAATTCGCTTGGAAAGCTAAAATG
Seq A exon
AGCTCAGTGCAGGACTGGGGAGAGGAGGTTGAGGAAGGAGCCATATACAACGTGACGCTGAAGAGGGTCCAAATTCAGCAGGCCGCTAACAAAGGAGCAAGATGGCTGGGG
Seq C2 exon
GCGGAGGGTGACCGTTTGCCCCCGGGTCACACGGTCAGTCAGTTGGAGACGTGTAAAATCAGAAGCATTCGAGCAGGGACTCTTGAACGCCTGGTAGAAACGCTCCTTACAGCATTCGGTGACAATGACCTTACCTACACCAGCATCTTCCTCTCCACGTACAGGGCCTTTGCCTCAACGCAGAGCGTCCTGGAGTTGCTGCTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005989-'3-7,'3-4,5-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061815=RasGEF_N=PU(44.0=68.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCCAGACATCCGTGACC
R:
GAGTCCCTGCTCGAATGCTTC
Band lengths:
246-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]