RnoEX0075458 @ rn6
Exon Skipping
Gene
ENSRNOG00000002347 | Rgl1
Description
ral guanine nucleotide dissociation stimulator,-like 1 [Source:RGD Symbol;Acc:1308947]
Coordinates
chr13:69984331-70070922:-
Coord C1 exon
chr13:70070756-70070922
Coord A exon
chr13:70018324-70018434
Coord C2 exon
chr13:69984331-69984432
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTTTATCCCATCCCTGGCAGAGC
3' ss Score
7.38
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
CAGATTCGTAATGCCTCCTGCTTACCTCTTTCAAGATGGAGGAGAAATCTGTGGGAGAACCTACTCAAGTGGTGTCTAAAGTCAAACTTTCCACAAAAGTAGAAAACCCAGGACACTGGCTGGTGGATGATCACGCTCGAATATGGGAAGTTTTAAAGACAGAGGAG
Seq A exon
AGCTCGATTCAGGACTGGGGTGAAGAGGTAGAGGAAGGAGCTGTTTACCATGTCACCCTCAAAAGAGTCCAGATTCAACAGGCGGCCAATAAAGGAGCAAGATGGCTAGGG
Seq C2 exon
GTTGAAGGGGACCAGCTGCCTCCAGGACACACAGTCAGTCAGTATGAGACCTGTAAGATCAGGACCATCAAAGCTGGCACACTGGAGAAGCTTGTGGAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002347-'3-11,'3-6,10-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.150
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0061815=RasGEF_N=PU(7.5=25.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTAATGCCTCCTGCTTACC
R:
TTCTCCAGTGTGCCAGCTTTG
Band lengths:
251-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]