DreEX0061882 @ danRer10
Exon Skipping
Gene
ENSDARG00000007727 | rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:ZFIN;Acc:ZDB-GENE-010131-1]
Coordinates
chr16:45427033-45430844:-
Coord C1 exon
chr16:45430797-45430844
Coord A exon
chr16:45427270-45427353
Coord C2 exon
chr16:45427033-45427199
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTGATGTCTCTCTTGTTCAGTCC
3' ss Score
8.86
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGGGAGCCGTCCCCAATGAAGACCACATGGTACTGCCCGCTGGACCTG
Seq A exon
TCCACTGTGTCTGAAATGGAGGAGGACGGCATCATCTACACTGTGGTGGTGAAACAAGGTCCTGGTTCCCCCACCAGCCCTCAG
Seq C2 exon
TCTACAGCAGCCCGCTCTCAGCACGTCAAAGCCGGGACAGAGGAGAAGCTGGTCCTGCATCTCCTTCACTCCTTCTCCATGGGCGACTCATCCTTCATCTCCATCTTCCTCTCCACCTACCGCTCCTTCACCTCCACCCAGAGAGTGCTGGACATCCTCATATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007727-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=0.339 C2=0.161
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061815=RasGEF_N=PU(49.5=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCGTCCCCAATGAAGAC
R:
GCGGTAGGTGGAGAGGAAGAT
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]