MmuEX6076932 @ mm10
Exon Skipping
Gene
ENSMUSG00000041354 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:MGI Symbol;Acc:MGI:107483]
Coordinates
chr17:33930245-33932218:+
Coord C1 exon
chr17:33930245-33930441
Coord A exon
chr17:33931726-33931809
Coord C2 exon
chr17:33932040-33932218
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTCTTGCTCCTCCAGGCT
3' ss Score
10.94
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
GCGCCCCCATGGCCCGACCCCGCTGATTGCTTCTCTCGGCCATGCTCCCGCGGCCCCTGCGGCTGCTTTTGGACACGACCCCCCCCGGGGGAGTCGTGCTGAGCAGCTTCCGGAGCCGGGACCCCGAAGAGGGTGGGGACCCAGGTGGCCGGGCCGTGGGCGGGGGGCAGGAGGAAGAGGATGAGGAAGAAGAAGAG
Seq A exon
GCTTCTGTGTCAGTCTGGGACGAGGAGGAGGATGGTGCGACCTTTACTGTCACAAGCCGCCAGTACAGGCCTCTTGACCCCTTG
Seq C2 exon
GCTCCCTTGCCTCCACCTCGCTCCTCCCGACGGCTCCGCGCTGGCACTCTGGAGGCCCTGGTCAGACACCTCTTGGATGCCAGGACAGCAGGGGCTGACATGATGTTCACTCCGGCCTTGCTGGCCACCCACCGGGCCTTCACCTCCACTCCTGCCCTGTTTGGGCTTGTGGCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041354-'1-10,'1-6,7-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.904 A=0.893 C2=0.233
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061815=RasGEF_N=PU(50.0=81.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAGGAAGAGGATGAGGA
R:
GGAGTGGAGGTGAAGGCCC
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types