BtaEX6096903 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016827 | RGL2
Description
Bos taurus ral guanine nucleotide dissociation stimulator-like 2 (RGL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075154]
Coordinates
chr23:7412756-7414681:-
Coord C1 exon
chr23:7414482-7414681
Coord A exon
chr23:7413192-7413275
Coord C2 exon
chr23:7412756-7412934
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCCCCTTCTTGCTCCTCCAGGCC
3' ss Score
12.08
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
GCGCCCCCATGGCCCGACCCCGCTGACTCCTTCAGCCGGCCATGCTCCCGCGGCCCCTGCGGCTGCTGTGGGACACGAGCCCCCCTGGGGGAGTCGTGCTGAGCAGCTTCCGGAGTCGAGACCCCGAAGAGGGTGGGGGCCCCAGTGGCCGGGGCGGGGGCGGGGGGCAGGAGGAGGAAGACGACGACGACGACGACGAG
Seq A exon
GCCCCTGTGTCTGTCTGGGAGGAGGAGGAGGATGGTGCTACCTTTACAGTCACAAGTCGCCAGTATCAGCCTCTTGATTCCTTG
Seq C2 exon
GCCCCAAGGCCTCCTCTGCGTTCCTCCCGGAAACTCCGAGCTGGCACCCTGGAGGCCCTGGTCAGACACCTGCTGGACGCCCGTACATCAGGGGCTGACATGACCTTCACAGCAGCCTTCTTGGCCACTCACCGGGCCTTCACCTCCACGCCTGCCCTGCTAGGGCTTATGGTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016827-'1-3,'1-1,5-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.830 A=0.964 C2=0.183
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061815=RasGEF_N=PU(50.0=81.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGGAGGAAGACGACGAC
R:
CGGTGAGTGGCCAAGAAGG
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]