RnoEX0075465 @ rn6
Exon Skipping
Gene
ENSRNOG00000000474 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:RGD Symbol;Acc:1302985]
Coordinates
chr20:5464006-5465985:-
Coord C1 exon
chr20:5465788-5465985
Coord A exon
chr20:5464436-5464519
Coord C2 exon
chr20:5464006-5464198
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTCTTGCTCCTCCAGGCT
3' ss Score
10.94
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
GCACCCCCAATGGCCCGACCCCGCTGATTCCTTCTCTCGGCCATGCTCCCGCGGCCCCTGCGGCTGCTTTTGGACACGAACCCCCCCGGGGGAGTCGTGTTGAGCAGCTTCCGGAGCCGGGACCCCGAAGAGGGTGGGGACCCAGGTGGCCGGGCCGTGGGCGGGGGGCAGGAGGAAGAGGAGGAGGAAGAAGAAGAG
Seq A exon
GCTTCTGTGTCAATCTGGGATGAGGAGGAGGATGGTGCGACCTTTACTGTCACAAGCCGCCAGTATAGGCCTCTTGATCCCTCG
Seq C2 exon
GCCCCCTTGCCTCCGCCTCGCTCCTCCCGAAGGCTCCGTGCTGGTACTCTGGAGGCCCTGGTCAGACACCTCTTGGATGCCAGGACATCAGGGGCTGACATGACGTTCACTCCAGCCTTGCTGGCCACCCACCGGGCCTTCACCTCCACTCCTGCCCTGTTTGGGCTTGTGGCTGACAGGTCAGGAGCCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000474-'2-5,'2-4,6-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.942 A=0.893 C2=0.388
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061815=RasGEF_N=PU(88.5=83.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTGAGCAGCTTCCGGAG
R:
GCATCCAAGAGGTGTCTGACC
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]