MmuEX6066261 @ mm9
Exon Skipping
Gene
ENSMUSG00000032316 | Clk3
Description
CDC-like kinase 3 [Source:MGI Symbol;Acc:MGI:1098670]
Coordinates
chr9:57608631-57613667:-
Coord C1 exon
chr9:57612881-57613667
Coord A exon
chr9:57609523-57609674
Coord C2 exon
chr9:57608631-57608847
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTCTTGTGGCCTAGATG
3' ss Score
8.01
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCCCGGGCGCACCGACCGCCTTCGTCTCTAGCGCCCTCCCGGGCCCCGGGAGAACAATGCCGGTCCTCTCCGCGCGCAGGAAGAGGCTGGCGAGCACAGCTGGGCCGCGGCGGGGAAGCGGCCCCAGCCTGGCAGTCCGGTGGGTTCCTCCTTTAGGCCCAGAGCCGTCCTCAGACCGTGGTCGCGCACCGATGCGGCCTCGGGGGCCTACGTGCAGCACCACACGGAGAGGGGCAGGCCGCGGCCCGAGGCTGCTCCCGGGACCTCCGGGAAGAGACCTCCACCGATGTCGCCCGGACCCTGGCGGGGCAGGCCAGTCCCCCAGAGTCTGCGAGTTCGGGGCTAGAGCGGTCAGGCCTCTGGGCCGGGTCGAGCCCGGGCCGCCGACGGCTGCGTCACGCGAGGGGGCGGTGCTGCCACGGGCGGAGGCCAGAGCCGGAAGCGGAAGAGGCGCTCGGAGTGGGGAGTGGGGCCTAGCCGCAGCCGGAGCCTGGGAGACG
Seq A exon
ATGCATCACTGTAAGCGATACCGTTCCCCAGAGCCAGACCCATACCTGAGCTACCGCTGGAAGAGGAGGCGGTCTTACAGTCGGGAGCATGAAGGTCGACTACGATACCCATCCCGAAGGGAGCCTCCCCCACGGAGATCACGGTCCAGAAG
Seq C2 exon
CCATGATCGTATACCCTACCAGCGGAGGTACCGGGAACACCGTGACAGTGATACGTATCGGTGTGAAGAGCGGAGCCCATCTTTTGGAGAGGACTGCTATGGGTCTTCACGTTCTCGACATCGGAGACGGTCACGAGAGAGGGCGCCGTACCGTACCCGCAAGCATGCCCACCACTGTCACAAACGCCGTACCAGGTCTTGTAGCAGTGCTTCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032316-'0-1,'0-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.953 A=0.667 C2=0.781
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAGACCTCCACCGATGT
R:
CTCCGCTGGTAGGGTATACGA
Band lengths:
258-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: