MmuEX6066261 @ mm10
Exon Skipping
Gene
ENSMUSG00000032316 | Clk3
Description
CDC-like kinase 3 [Source:MGI Symbol;Acc:MGI:1098670]
Coordinates
chr9:57758627-57763088:-
Coord C1 exon
chr9:57762988-57763088
Coord A exon
chr9:57761716-57761867
Coord C2 exon
chr9:57758627-57761040
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTCTTGTGGCCTAGATG
3' ss Score
8.01
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TTTACATAAATTGCCTCCCAATCCTGCTCATACACAAGTACCTATTTCATCTTTGGACTGTGCTGGTGAGATGGAGCAGCCTTGATGGATTTGTTTAAAAG
Seq A exon
ATGCATCACTGTAAGCGATACCGTTCCCCAGAGCCAGACCCATACCTGAGCTACCGCTGGAAGAGGAGGCGGTCTTACAGTCGGGAGCATGAAGGTCGACTACGATACCCATCCCGAAGGGAGCCTCCCCCACGGAGATCACGGTCCAGAAG
Seq C2 exon
CCATGATCGTATACCCTACCAGCGGAGGTACCGGGAACACCGTGACAGTGATACGTATCGGTGTGAAGAGCGGAGCCCATCTTTTGGAGAGGACTGCTATGGGTCTTCACGTTCTCGACATCGGAGACGGTCACGAGAGAGGGCGCCGTACCGTACCCGCAAGCATGCCCACCACTGTCACAAACGCCGTACCAGGTCTTGTAGCAGTGCTTCCTCGGTGAGTGGTGGCCAGAGTGTGCTAATAGGGGCCTAAAGGCCTCACCTCTTTCTCGCTTCTCTCAGGCTAGCTGGTCTGGGTGAGTACTGGCAACCCTGTGTACATACACCATTGTGGGTACACACATGAGGTGTGTGTGTGCGTGTGTGCTGTCTGGTATAGGACTGAGCAAGGATGGTATGCCTTCCATTTTCTGGCCCCTTGCCAGTGGCAACTATAAGGGCTCTGGCTCCGGCGTTGGCTGATTTCCAGCCTGTCTATATCTTTCCACTGTTCCATACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032316-'14-3,'14-2,19-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.556 C2=0.673
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0006920=Pkinase=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGGAGCAGCCTTGATGG
R:
CCGAGGAAGCACTGCTACAAG
Band lengths:
252-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types