DreEX0022159 @ danRer10
Exon Skipping
Gene
ENSDARG00000005908 | clk4b
Description
CDC-like kinase 4b [Source:ZFIN;Acc:ZDB-GENE-050227-19]
Coordinates
chr21:32252589-32267851:-
Coord C1 exon
chr21:32267745-32267851
Coord A exon
chr21:32255941-32256098
Coord C2 exon
chr21:32252589-32252802
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTCTATTCTGGTGTGGTCAGATG
3' ss Score
5.58
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ACCGGAAACGTTCAGTTGTGTTAGGCGGAAGTGTTAACACACAGTGCTAGAGTTCAGTCTGGAACGCAGAGTTTCTTATTTCACGACTTGAAAGTTACGAGTGAAAG
Seq A exon
ATGCGGCGATCTAAGCGGATGCGGTCACCGGATGGCTGGATTGCGGAGTACAGCTGGGAGGAGAGAGTGGAGGTGCACAAAAGACCCAAACACAGATCGCGGAGCGGGGAAAGAGAGAGGCAACCTGGCCAAACTCATCACTATAAGACATACGAGAG
Seq C2 exon
GTGTCATATTAGCTCAAAGAGGCTGGAGTGCAGAGAGCGCAGGGCCAGAGAGGCCAGTCTGGAGCATAGCCGTTATAAGGGTCGAGTGGACCCGGTCAGAGAGACAGAGCGGGAGAAAGATGGCTACCATTACAGCCAGTCCCGAAGTGGGCGAAGTCGGCGCAGCAGCAGAGCTCGCCAACATTCACACCACCGCAGTCCTGGCTCAGACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005908-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.717 C2=0.958
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCAGTTGTGTTAGGCGGA
R:
CTTCGGGACTGGCTGTAATGG
Band lengths:
246-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]