HsaEX0015696 @ hg38
Exon Skipping
Gene
ENSG00000013441 | CLK1
Description
CDC like kinase 1 [Source:HGNC Symbol;Acc:HGNC:2068]
Coordinates
chr2:200861238-200864699:-
Coord C1 exon
chr2:200864564-200864699
Coord A exon
chr2:200861702-200861862
Coord C2 exon
chr2:200861238-200861466
Length
161 bp
Sequences
Splice sites
3' ss Seq
AAAACTTGCCTTTTATGTAGATG
3' ss Score
5.38
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GTGTTTTCGAGACGAGTCTCGACGCAGCAGCTGTCAGCTCCATTTTGTTGTTGGTGCGCGACGCAGTCAGCTGCGTGATTCCCGTGATTGCGTTACAAGCTTTGTCTCCTTCGACTTGGAGTCTTTGTCCAGGACG
Seq A exon
ATGAGACACTCAAAGAGAACTTACTGTCCTGATTGGGATGACAAGGATTGGGATTATGGAAAATGGAGGAGCAGCAGCAGTCATAAAAGAAGGAAGAGATCACATAGCAGTGCCCAGGAGAACAAGCGCTGCAAATACAATCACTCTAAAATGTGTGATAG
Seq C2 exon
CCATTATTTGGAAAGCAGGTCTATAAATGAGAAAGATTATCATAGTCGACGCTACATTGATGAGTACAGAAATGACTACACTCAAGGATGTGAACCTGGACATCGCCAAAGAGACCATGAAAGCCGGTATCAGAACCATAGTAGCAAGTCTTCTGGTAGAAGTGGAAGAAGTAGTTATAAAAGCAAACACAGGATTCACCACAGTACTTCACATCGTCGTTCACATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000013441_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.441 C2=0.814
Domain overlap (PFAM):
C1:
NA
A:
PF105774=UPF0560=PU(25.0=83.3)
C2:
PF105774=UPF0560=FE(42.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGTCTTTGTCCAGGACG
R:
CCCATGTGAACGACGATGTGA
Band lengths:
250-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development