MmuEX6024515 @ mm10
Exon Skipping
Gene
ENSMUSG00000026034 | Clk1
Description
CDC-like kinase 1 [Source:MGI Symbol;Acc:MGI:107403]
Coordinates
chr1:58419667-58424066:-
Coord C1 exon
chr1:58423920-58424066
Coord A exon
chr1:58421774-58421934
Coord C2 exon
chr1:58419667-58421308
Length
161 bp
Sequences
Splice sites
3' ss Seq
GTAAAATTTGTCTTTCATAGATG
3' ss Score
7.78
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTCACCAGTTTTTCCGAGAAGAAGCTCGCACTGCGTCTGTCCGCACCATTTTGTGTTGGGAGATCGTCGTAATCGTTTGCAGACTTCTCGCCGTCGCCTTGTAAGCTTTGTCTTCGCCTTGCAAGCTTTGTCTTCAGGGTTGGAAAG
Seq A exon
ATGAGACATTCAAAGAGAACTTACTGTCCTGACTGGGATGAAAGAGACTGGGATTATGGAACATGGAGAAGCAGCAGCAGTCACAAAAGAAAGAAGAGATCACATAGCAGCGCCCGTGAGCAAAAGCGCTGCAGGTACGATCACTCCAAAACGACAGACAG
Seq C2 exon
CTATTATCTGGAAAGCAGATCCATAAATGAGAAAGCTTATCATAGTCGACGCTATGTTGATGAATACAGGAATGACTACATGGGCTACGAGCCAGGGCATCCCTATGGAGAACCTGGAAGCAGATACCAGATGCATAGTAGCAAGTCCTCTGGTAGGAGTGGAAGAAGCAGTTACAAAAGTAAACACAGGAGTCGCCACCACACTTCGCAGCACCATTCACACGGGGTATGAGTGCCTTTTAAACGTTCTGAAAGGTTTTATTTCCCATGGAGAACAGGAAACAGTTTTGTGTTTGAGAAAATTTCAAGATAAAAGTCATCACAACTCTACCTTGCAGGAGTATTCTTTTAGTATTTGTGTATTACATAAGAAATTCATGAAAATAGTGATATTTAGTTCTGTAATGATAGGAAAGATTGTCTTAATGCTATTCCAAGAAATACTATTTTGATAAATTGTCAGTTTGTTCCAAGGAATTAGGTATTTTTGTGTTAGGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026034-'1-4,'1-1,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.438 C2=0.726
Domain overlap (PFAM):
C1:
NA
A:
PF105774=UPF0560=PU(26.0=85.2)
C2:
PF105774=UPF0560=FE(12.4=100),PF0006920=Pkinase=PU(6.9=95.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTCTTCGCCTTGCAAGC
R:
GGTGGCGACTCCTGTGTTTAC
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types