DreEX6057006 @ danRer10
Exon Skipping
Gene
ENSDARG00000089372 | clk4a
Description
CDC-like kinase 4a [Source:ZFIN;Acc:ZDB-GENE-030131-576]
Coordinates
chr14:6633853-6637805:-
Coord C1 exon
chr14:6637641-6637805
Coord A exon
chr14:6637050-6637207
Coord C2 exon
chr14:6633853-6634117
Length
158 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTGTTTTATCAGATG
3' ss Score
9.26
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
Exon sequences
Seq C1 exon
CGCTTCAGATCCGGTGACGTAAACCTCCATAAGCTCTCGAACATTCCAGACCAGCTCAGCCGACACCATTTTGAACCGCACCAACTGCATCAAAGAAGACGGAAATAAATTCGCCGTTTACCGAAGCAGATCTCGAAATACTTAAACGAGACTTTCATCAACCAG
Seq A exon
ATGAGACAGACGCAGAGAGAGCGCTCTCCCTGGCTGAGGGAGTTGAGTCTAGAAGACAGAATAATGGAGACCAGAAAGAGACACCGACGAGACTCGCACAGCAGCGAGAGAGAGAACAAATACAGAAAACATCACCATCATTACAAGAACAGCGACGG
Seq C2 exon
GCATTGCCTTGAGAAAAGAAGCTCAAACGAAAGACTGGACACTAGTGAAAAACACGCAGTGTTCAGAGACCATGAACACAACGGCTACGCTGCCTGTAAAGACAAGGAGAGAAACCGGGACCGATCCAGATCCCGTGAGAGACACCGGGAACGAGAGCGAGATCGAGACTGGCACCATTACAGTAAATCCTCTGGGAACAGCATGCGGAGCAGCCGGCACAGACACCGGCACAGGCACCGCCGTTCACACCCTCACTCTGACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089372-'0-2,'0-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.981 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACACCATTTTGAACCGCAC
R:
GTGTCTCTCACGGGATCTGGA
Band lengths:
250-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]