HsaEX6101503 @ hg19
Exon Skipping
Gene
ENSG00000113240 | CLK4
Description
CDC-like kinase 4 [Source:HGNC Symbol;Acc:13659]
Coordinates
chr5:178044345-178054089:-
Coord C1 exon
chr5:178053947-178054089
Coord A exon
chr5:178050257-178050417
Coord C2 exon
chr5:178044345-178045779
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTTTTCATTTCTATCAACAGATG
3' ss Score
11.14
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
GTAGGTGGTGCTAGAGGCGACTCGGGGGATTCTAGGGCGACGGCGCTGCCGCCATTTTGTGGGGTGTTTGTCGCAGCGGCCGAGGAGGGAAGACGGCAGTTTGGCGACATTTCTCGGCCGAAGGGCCATTTGCTTTTGCGGAG
Seq A exon
ATGCGGCATTCCAAAAGAACTCACTGTCCTGATTGGGATAGCAGAGAAAGCTGGGGACATGAAAGCTATCGTGGAAGTCACAAGCGGAAGAGGAGATCTCATAGTAGCACACAAGAGAACAGGCATTGTAAACCACATCACCAGTTTAAAGAATCTGATTG
Seq C2 exon
TCATTATTTAGAAGCAAGGTCCTTGAATGAGCGAGATTATCGGGACCGGAGATACGTTGACGAATACAGGAATGACTACTGTGAAGGATATGTTCCTAGACATTATCACAGAGACATTGAAAGCGGGTATCGAATCCACTGCAGTAAATCTTCAGTCCGCAGCAGGAGAAGCAGTCCTAAAAGGAAGCGCAATAGACACTGTTCAAGTCATCAGTCACGTTCGGTATGATTGGTTTTGTTTTCAATTTGAGTGGAGTTTTATTTGTGTGTACTCTTAACGAGCTGATAAGTTTCTAATTTTTTATATATATATATATAAAATACTATTTGGATATATTATAATTGTATTTATATTACTTAAATCCTTAAAGGAAACCTCCAAATTCTTGTAGCTGATCTGTATATTTATTAGCTAGCCCTCATTTGCCCACATTTCCTCATATTCTGCAGACCAGATAATGAGTTTATTGATTTTAATAATAAAACTATTTTTTTATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113240-'1-16,'1-9,2-16=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.459 C2=0.328
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0006920=Pkinase=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGTGGGGTGTTTGTCGCA
R:
CCTGCTGCGGACTGAAGATTT
Band lengths:
255-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)