RnoEX0021847 @ rn6
Exon Skipping
Gene
ENSRNOG00000003714 | Clk4
Description
CDC-like kinase 4 [Source:RGD Symbol;Acc:1310274]
Coordinates
chr10:36716830-36725605:+
Coord C1 exon
chr10:36716830-36716930
Coord A exon
chr10:36720700-36720860
Coord C2 exon
chr10:36725383-36725605
Length
161 bp
Sequences
Splice sites
3' ss Seq
CATTCCCTTCTCGTTAACAGATG
3' ss Score
8.9
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
GGCGCGGACGCCATTTTGTCGGTGTTTGTCGCAGCGGCTGGAGAGAAACGACGGCGGTTTGGCGACATTTCTCGGCCAAAAGGCCTTTTGCTTTTGCGGAG
Seq A exon
ATGCGGCATTCCAAACGAACTCACTGTCCTGATTGGGATAGCAGAGAAAGCTGGGGCCATGAAAGCTACAGTGGAAGTCACAAACGGAAGAGGAGATCTCATAGCAGTACGCAGGAGAATAGGCATTGTAAACCACATCATCAGTTTAAAGACACTGATTG
Seq C2 exon
TCACTATTTAGAAGCAAGATGCTTGAATGAGAGAGATTATCGGGATCGGAGATACATTGATGAATACAGAAATGACTACTGTGAAGGATATGTTCCAAGACATTACCATAGAGACATTGAAAGCACTTACCGGATCCATTGCAGTAAATCCTCAGTCAGAAGCAGGAGAAGCAGCCCTAAAAGAAAACGTAACAGACACTGTGCGAGTCATCAGTCACATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003714-'1-7,'1-1,5-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACATTTCTCGGCCAAAAG
R:
CTCGCACAGTGTCTGTTACGT
Band lengths:
247-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]