BtaEX6040016 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019414 | CLK4
Description
CDC-like kinase 4 [Source:HGNC Symbol;Acc:HGNC:13659]
Coordinates
chr7:41114265-41122562:-
Coord C1 exon
chr7:41122497-41122562
Coord A exon
chr7:41119230-41119390
Coord C2 exon
chr7:41114265-41114487
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTTTTCATTTCCATTAACAGATG
3' ss Score
10.63
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
TACTGGAGAGAGAAGACGGCGGTTTGCCGACAATTCGCGGCCAAAGGGCCTTTTGTTTTTGCAGAG
Seq A exon
ATGCGGCATTCCAAAAGAACTCACTGCCCTGATTGGGATAGCAGAGAAAGCTGGGGACATGAAAGCTACAGTGGAAGTCACAAACGGAAGAGGAGATCCCACAGCAGTACGCAAGAGAACAGATATTGTAAACCACATCACCAGTTTAAAGAATCTGATTG
Seq C2 exon
TCATTATTTAGAAGCAAGGTCCTTGAATGAGAGAGATTATCGGGACCGGAGATACATTGATGAATACAGAAATGACTACTGCGAAAGATATGTTCCTAGACATTATCACAGAGACGTTGAAAGCAGTTTTCGAATCCACTGCAGTAAATCTTCAGTCCGAAGCAGGAGAAGCAGTCCTAAAAGGAAGCGTAATAGACACTGTTCAAGTCATCAGTCACATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019414-'1-3,'1-0,4-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.407 C2=0.321
Domain overlap (PFAM):
C1:
NA
A:
PF081797=SspP=WD(100=51.9),PF050777=DUF678=PU(72.3=63.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGGAGAGAGAAGACGGCG
R:
GACTGCTTCTCCTGCTTCGGA
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]