MmuEX0011723 @ mm9
Exon Skipping
Gene
ENSMUSG00000020385 | Clk4
Description
CDC like kinase 4 [Source:MGI Symbol;Acc:MGI:1098551]
Coordinates
chr11:51076616-51085521:+
Coord C1 exon
chr11:51076616-51076771
Coord A exon
chr11:51080673-51080833
Coord C2 exon
chr11:51085302-51085521
Length
161 bp
Sequences
Splice sites
3' ss Seq
CCCCCTCTTCTCGTTAACAGATG
3' ss Score
10.92
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
CGCGCTGGCTCGGCGTAGGTGGCGCTGGAGCCACCTGAGGAGGTTGTAGGGTGACGGCGCGGACGCCATTTTGTCGGTGTCTGTCGCAGCGGCTGGAGAGGAACGACGGCGGTTTGGCGACATTTCTCGGCCAAAAGGCCGCTTGCTTTTGCGGAG
Seq A exon
ATGCGGCATTCCAAACGAACTCACTGTCCTGATTGGGATAGTAGAGAAAGCTGGGGCCATGAAAGCTACAGTGGAAGTCACAAACGCAAGAGAAGGTCTCACAGCAGTACTCAGGAGAACAGGCACTGTAAACCACATCATCAGTTTAAAGACTCGGATTG
Seq C2 exon
TCACTATTTAGAAGCAAGATGCTTGAATGAGAGAGATTATCGGGACCGGAGATACATTGATGAATACAGAAATGACTACTGCGAAGGATATGTTCCAAGACATTACCATAGAGACGTTGAAAGCACTTACCGGATCCATTGCAGTAAATCCTCAGTCAGGAGCAGGAGAAGCAGCCCTAAGAGAAAGCGTAATAGACCCTGTGCAAGTCATCAGTCGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020385-'1-11,'1-7,2-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.119 C2=0.297
Domain overlap (PFAM):
C1:
NA
A:
PF078926=DUF1667=PU(64.0=91.4),PF053316=DUF742=PU(44.6=94.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGTCGGTGTCTGTCGCAG
R:
TTCTCCTGCTCCTGACTGAGG
Band lengths:
258-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: