GgaEX1015757 @ galGal4
Exon Skipping
Gene
ENSGALG00000028438 | CLK1
Description
CDC-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:2068]
Coordinates
chr7:10803935-10806251:-
Coord C1 exon
chr7:10805308-10806251
Coord A exon
chr7:10804822-10804961
Coord C2 exon
chr7:10803935-10804181
Length
140 bp
Sequences
Splice sites
3' ss Seq
AAACGTTGCGTGTGTTTCAGATG
3' ss Score
8.82
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATGTTGAAGCAACAGCCGTTGCAGACCACCGGCTTTCTGAAACCTTCCTGTGTCAATACTAATGTGCTGTACTTCATTGCTTTTTCAGAAAGTGTAGTACCCTAGCTAATTTTTCCCCCTAGGTGAAAGCAGTGTACCACACAGAGAAAACTCTCTGAAGGCAACGTTTTGGTTTCTCTTAGCGGGAGAGCACGGCGGGTTGTCGCAGGGGCACGCACCCCCCTGTGCTCGCTGCGGAGCGGCTGTGGGCGGGCAGGCAGGCAGGCAGGCAGGCACGGACGGCGGGCGGGGCGCTGAGGGAGCACCACCCCCCATAGGGCTCCGCCTCCGCCCCGCCCCGCTGTGTGACGCACCGCTCGCGCCATAATGTTCCGCCTCGCCGCCATTTTGTCGCGGCCGAGAGTTGAGAGCTGAGTGCGGCTAACGTGCGGAGGTAGCGACGGCTACAGAGAGAGTAGCGGCGGCGGTCGGAGAGCGCGGCGGCAACCCGGGCTGCTGAG
Seq A exon
ATGGGAAATTACGAGCGCAGCGACCAGCCCGGGTGGGATCGGCGGCGCGGCGGCAGTGAGCGCCAGGGGAAGCGGAGATCGCACAGCGGTGCCCAGGAGAGCAGGCACTACAGGCATGAGATGGCCAAGCGGCCTCACAG
Seq C2 exon
CAAATGTTCGGAGGCCAAATCCGTAAATGACCGGGAGCACCACAAGCGGAGACGCTATGTGGAGGAGTACAGGAGTGAGCACACACAGGGCTATGACAGCAGGCAACAACACCGCGAGCACGACAAGAGTGCCCACCACCACCACCACCACCACAGCAGCAGGTCCTTGGGCCGCAGCGGGAAGGGCGGAGACAAGCGGTGGTACAGGACGCAGCACAGCGCCGGCCACCACCACCATCACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028438_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCATAATGTTCCGCCTCGCC
R:
GGTGTTGTTGCCTGCTGTCAT
Band lengths:
252-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]