HsaEX0015696 @ hg19
Exon Skipping
Gene
ENSG00000013441 | CLK1
Description
CDC-like kinase 1 [Source:HGNC Symbol;Acc:2068]
Coordinates
chr2:201725961-201729422:-
Coord C1 exon
chr2:201729287-201729422
Coord A exon
chr2:201726425-201726585
Coord C2 exon
chr2:201725961-201726189
Length
161 bp
Sequences
Splice sites
3' ss Seq
AAAACTTGCCTTTTATGTAGATG
3' ss Score
5.38
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GTGTTTTCGAGACGAGTCTCGACGCAGCAGCTGTCAGCTCCATTTTGTTGTTGGTGCGCGACGCAGTCAGCTGCGTGATTCCCGTGATTGCGTTACAAGCTTTGTCTCCTTCGACTTGGAGTCTTTGTCCAGGACG
Seq A exon
ATGAGACACTCAAAGAGAACTTACTGTCCTGATTGGGATGACAAGGATTGGGATTATGGAAAATGGAGGAGCAGCAGCAGTCATAAAAGAAGGAAGAGATCACATAGCAGTGCCCAGGAGAACAAGCGCTGCAAATACAATCACTCTAAAATGTGTGATAG
Seq C2 exon
CCATTATTTGGAAAGCAGGTCTATAAATGAGAAAGATTATCATAGTCGACGCTACATTGATGAGTACAGAAATGACTACACTCAAGGATGTGAACCTGGACATCGCCAAAGAGACCATGAAAGCCGGTATCAGAACCATAGTAGCAAGTCTTCTGGTAGAAGTGGAAGAAGTAGTTATAAAAGCAAACACAGGATTCACCACAGTACTTCACATCGTCGTTCACATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000013441_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.441 C2=0.795
Domain overlap (PFAM):
C1:
NA
A:
PF105774=UPF0560=PU(25.1=83.3)
C2:
PF105774=UPF0560=FE(42.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGTCTTTGTCCAGGACG
R:
CCCATGTGAACGACGATGTGA
Band lengths:
250-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)