RnoEX0021820 @ rn6
Exon Skipping
Gene
ENSRNOG00000025768 | Clk1
Description
CDC-like kinase 1 [Source:RGD Symbol;Acc:1311469]
Coordinates
chr9:65305254-65307995:-
Coord C1 exon
chr9:65307863-65307995
Coord A exon
chr9:65305842-65306002
Coord C2 exon
chr9:65305254-65305479
Length
161 bp
Sequences
Splice sites
3' ss Seq
GTAAAAATTGTCTTTTATAGATG
3' ss Score
7.77
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCAGTTTTCGGACAAGAATCTCTTGCTGGTGTTGTTCGCACCATTTTGTGCTGAGAGGTAGTTGCTGCCGCTTGCACACTTCCCTCCGTCGCCTTGAGAGCTTTGTCTTCAGGGTTGGAGTCTCTGCGGAAAG
Seq A exon
ATGAGACATTCAAAGAGAACTTACTGTCCTGACTGGGATGAAAGAGATTGGGATTATGGAACATGGAGAAGCAGCAGCAGTCATAAAAGAAGGAAGAGATCACATAGCAGTGCCCGTGATTATAAGCGATGCAAATACAATCACTCCAAAACAACGGACAG
Seq C2 exon
CTATTATCTGGAAAGTAGATCCATACATGAGAAAGCCTATCACAGCCGACGCTATGTTGATGAATACAGGAATGACTACATGACCTACGAGCCAGGGTATCCCTATGGAGAACCTGGAAGCAGATACCAGAATCATAGTAGCAAGTCCTCTGGTAGGAGTGGAAGAAGCAGTTACAAAAGCAAACATAGGAGTCACCACCACACGTCACATCGTCGTTCACATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025768-'1-1,'1-0,5-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.333 C2=0.711
Domain overlap (PFAM):
C1:
NA
A:
PF105774=UPF0560=PU(26.3=85.2)
C2:
PF105774=UPF0560=FE(42.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGGAGTCTCTGCGGAAAG
R:
CCCATGTGAACGACGATGTGA
Band lengths:
247-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]