DreEX6043274 @ danRer10
Exon Skipping
Gene
ENSDARG00000059870 | clk2b
Description
CDC-like kinase 2b [Source:ZFIN;Acc:ZDB-GENE-060929-1126]
Coordinates
chr16:54671467-54679400:-
Coord C1 exon
chr16:54679322-54679400
Coord A exon
chr16:54672875-54673059
Coord C2 exon
chr16:54671467-54671701
Length
185 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTGTGTTGTGTTCAGATG
3' ss Score
10.11
5' ss Seq
GAGGTACGG
5' ss Score
9.4
Exon sequences
Seq C1 exon
AGTTCGGTTTACGGAGCGGTAAAATAACGGCAGAACGGATTTTCTGTGGGACAAACGCACCGGCGTCGCTGCTCAAGCG
Seq A exon
ATGCCTCACTCTCGGCGGTACCCGTCATCGGAGCGGACCCGCAGCCGGAGCAGGAGCCGTCACATGCGGTATGAGCGGCACCGTCGCAGACGACGCAGCCGAACACGCAGTCGCAGCCGTTCTATATCATCCCGGAGCAGGAGACGCCATCGGGAGAGACGCCACAGAGACAGCAGCTCCAGGAG
Seq C2 exon
ATCCAGCTACCAGCAGCCATCCGGCGAGCGCAGGAGGAGCAGCAGACGCTACTGTCGGGACGAGCGGGAGGAGTTTGACCGAGACTACACCTTCACAGACGGATATTTCAGACACACACGCTCTCGAGATCACCGTACAGAGAGAGACAGCGGACGCAGACGGAGACGCCGCAGAACCAGGACCAGAACTCGATCCAGAACACGCTCATACAGCCAGAGCCGGTCCATATCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059870-'2-2,'2-1,6-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.747
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCGGTAAAATAACGGCA
R:
GTTCTGGTCCTGGTTCTGCG
Band lengths:
257-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]