RnoEX6010275 @ rn6
Exon Skipping
Gene
ENSRNOG00000020500 | Clk2
Description
CDC-like kinase 2 [Source:RGD Symbol;Acc:1359711]
Coordinates
chr2:188478082-188481205:+
Coord C1 exon
chr2:188478082-188478814
Coord A exon
chr2:188479032-188479201
Coord C2 exon
chr2:188480977-188481205
Length
170 bp
Sequences
Splice sites
3' ss Seq
TGCTGCTTCTTCCCTTCTAGATG
3' ss Score
11.39
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CTGTGAGTGTGAGGTCAGCCTGGTCTACCAAGTGAACTCCAAAACAGCCAGGGCGGTGTAGAGATACCCTGTCTCAAACCAAAAAGAAAAGAGAAGCTCAGTTATTTTCTGCGGGATAAATCCAGTGGTGGTAGGGAACATACAGACAGACACACTTACCTTGTACTGTTTTACAACTTTGTGAAAAACTTGGGCAGACATGTGGGAGACCTTTGTGGGACCACATCCTGATCTCTGGAACTCTGTTCATAAAATCCTGGGACACTGAACTGCTCCCCTTGTGGCTCTCCTCATCTAGTGGGGAGAGAAGATGAGCTGTTAATAACTAAGACAACCGTGTAAACTAAAGCTTATTTTGTTTGCTTGTGAAGAACTCAGGATGGCACAGCTGCGCATGTTAGATGGCAGCAGAGATGAACTGTGGCAATATTAGTCACACACTTGTCACCTGTCGTGAACTGTGGCTCAGACCAGAAGGTCTTCATGGAGCCATGTTTGAG
Seq A exon
ATGCCTCATCCCCGAAGGTACCATTCCTCAGAGAGAGGTAGCCGGGGAAGTTACCACGAGCACTATCGGAGCCGAAAACATAAGCGAAGAAGAAGTCGCTCCTGGTCAAGTACCAGTGACCGGACAAGGCGGCGGCGGAGGGAGGATAGCTACCATGTTCGGTCTCGAAG
Seq C2 exon
CAGCTATGACGATCATTCATCTGACCGGCGGCTATACGATCGACGATACTGTGGCAGCTACAGGCGCAATGACTACAGCCGGGATAGAGGAGAGGCCTACTATGACACAGACTTTCGGCATTCCTATGAATACCATCGAGAGAACAGCAGTTACCGAAGCCAGCGCAGCAGCCGCCGGAAACCCAGACGGCGGAGAAGACGTAGCAGAACATTCAGCCACTCATCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020500-'2-4,'2-2,3-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=1.000 C2=0.578
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTGTGGCTCAGACCAGA
R:
GTTCTGCTACGTCTTCTCCGC
Band lengths:
256-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]