BtaEX0009261 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014393 | CLK2
Description
CDC-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:2069]
Coordinates
chr3:15422624-15425680:+
Coord C1 exon
chr3:15422624-15422898
Coord A exon
chr3:15424538-15424707
Coord C2 exon
chr3:15425452-15425680
Length
170 bp
Sequences
Splice sites
3' ss Seq
TCCTTTCCCTATCCTTACAGATG
3' ss Score
11.89
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGCGGATCGGAGAGGCCAGAGCCGGAGACCGAGCAGGGATCGGGCCCCGGGCGGGGGCGGTGCGAGCGGCGCCAAGCGAATCCTGGGGGCGGGGACGGAGCCGGGGCGGGAGGGACTGGAGCGGAGCCCGGGAACTAGGCGGGAGGTCCCAGGGTCTCGGGTTGGGGGGGTGGAGCCGCACTTCGTCGCCGCGGGGGTGCCGGGACTCCGGCCGCAGTGCCGCCGCCATCACGGACTTCCTGTGGGACAAGCGCACGGGCCTCGCCGCCAGAACG
Seq A exon
ATGCCTCATCCTCGAAGGTACCACTCTTCTGAGAGAGGCAGCAGAGGGAGTTACCACGAGCATTATCGGAGCCGAAAGCATAAGCGACGAAGAAGCCGCTCCTGGTCAAGCAGCAGTGACCGTACGCGGCGGCGCCGACGGGAAGACAGTTACCATGTCCGTTCCCGAAG
Seq C2 exon
CAGCTATGATGATCGTTCATCCGATCGGAGGGCGTATGACCGGCGATACTGTGGCAGCTACAGGCGCAACGACTACAGCCGAGATCGGGGAGAAGCCTACTATGACACAGACTACCGGCATTCCTATGAGTACCATCGGGAGAACAGCAGTTACCGCAGCCAGCGCAGCAGCCGTAGGAAGCACCGACGGCGGAGACGGCGCAGCCGGACATTCAGCCGTTCGTCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014393-'4-3,'4-1,7-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.909
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTAGGCGGGAGGTCC
R:
AGTAGGCTTCTCCCCGATCTC
Band lengths:
246-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development