MmuEX6072100 @ mm9
Exon Skipping
Gene
ENSMUSG00000068917 | Clk2
Description
CDC-like kinase 2 [Source:MGI Symbol;Acc:MGI:1098669]
Coordinates
chr3:88968717-88972845:+
Coord C1 exon
chr3:88968717-88969028
Coord A exon
chr3:88970957-88971126
Coord C2 exon
chr3:88972617-88972845
Length
170 bp
Sequences
Splice sites
3' ss Seq
TGCCTCTCCTTCCTCTCCAGATG
3' ss Score
11.99
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCGTCTGTGCGTGCGTGCTCGCTCACGGCGGCGGCGGCGGCGGAGCGGAGAGGCCAGAGCCGGAGACCGAGCTGGGATCGGGCCCCGGGCGGGGGCGGTGCGAGAGGCGCCGAGCGGATCCTGGGGGCGGGGACGGAGCCCGGGCGGGCGGGACTGGAGCAGAGCCCGGGAACGGGGCGGGAGGTCCCAGGGCCCCGGGTTGGGGGGTGGAACCGCACTTCGTCGCCGCGGGGGTGCCGGGACTCCGGCCGCAGTGCCGCCGCCATCACGGACTTCCTGTGGGACAAGCGCACGGGCCTCGCCGCCAGAACG
Seq A exon
ATGCCCCATCCCCGAAGGTACCATTCCTCAGAGCGAGGTAGCCGGGGGAGTTACCACGAACACTATCAGAGCCGAAAGCATAAGCGAAGAAGAAGTCGCTCCTGGTCAAGTAGCAGTGACCGGACAAGGCGGCGGCGGAGGGAGGACAGCTACCACGTTCGGTCCCGAAG
Seq C2 exon
CAGCTATGATGACCATTCGTCCGATCGGCGGCTGTACGATCGGCGGTACTGTGGCAGCTACAGGCGCAATGACTACAGCCGGGACAGAGGGGAGGCTTACTACGACACAGACTTTCGGCAGTCCTATGAATACCATCGAGAGAACAGCAGTTACCGAAGCCAGCGCAGCAGCCGAAGGAAACACAGAAGGCGGAGGAGACGGAGCCGGACATTCAGCCGCTCATCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068917-'1-4,'1-2,3-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.684
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACGGACTTCCTGTGGGA
R:
CTCCTCCGCCTTCTGTGTTTC
Band lengths:
247-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: