MmuEX6072100 @ mm10
Exon Skipping
Gene
ENSMUSG00000068917 | Clk2
Description
CDC-like kinase 2 [Source:MGI Symbol;Acc:MGI:1098669]
Coordinates
chr3:89164795-89168923:+
Coord C1 exon
chr3:89164795-89165106
Coord A exon
chr3:89167035-89167204
Coord C2 exon
chr3:89168695-89168923
Length
170 bp
Sequences
Splice sites
3' ss Seq
TGCCTCTCCTTCCTCTCCAGATG
3' ss Score
11.99
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCGTCTGTGCGTGCGTGCTCGCTCACGGCGGCGGCGGCGGCGGAGCGGAGAGGCCAGAGCCGGAGACCGAGCTGGGATCGGGCCCCGGGCGGGGGCGGTGCGAGAGGCGCCGAGCGGATCCTGGGGGCGGGGACGGAGCCCGGGCGGGCGGGACTGGAGCAGAGCCCGGGAACGGGGCGGGAGGTCCCAGGGCCCCGGGTTGGGGGGTGGAACCGCACTTCGTCGCCGCGGGGGTGCCGGGACTCCGGCCGCAGTGCCGCCGCCATCACGGACTTCCTGTGGGACAAGCGCACGGGCCTCGCCGCCAGAACG
Seq A exon
ATGCCCCATCCCCGAAGGTACCATTCCTCAGAGCGAGGTAGCCGGGGGAGTTACCACGAACACTATCAGAGCCGAAAGCATAAGCGAAGAAGAAGTCGCTCCTGGTCAAGTAGCAGTGACCGGACAAGGCGGCGGCGGAGGGAGGACAGCTACCACGTTCGGTCCCGAAG
Seq C2 exon
CAGCTATGATGACCATTCGTCCGATCGGCGGCTGTACGATCGGCGGTACTGTGGCAGCTACAGGCGCAATGACTACAGCCGGGACAGAGGGGAGGCTTACTACGACACAGACTTTCGGCAGTCCTATGAATACCATCGAGAGAACAGCAGTTACCGAAGCCAGCGCAGCAGCCGAAGGAAACACAGAAGGCGGAGGAGACGGAGCCGGACATTCAGCCGCTCATCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068917-'1-5,'1-2,6-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.678
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACGGACTTCCTGTGGGA
R:
CTCCTCCGCCTTCTGTGTTTC
Band lengths:
247-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types