DreEX0022142 @ danRer10
Exon Skipping
Gene
ENSDARG00000062954 | clk2a
Description
CDC-like kinase 2a [Source:ZFIN;Acc:ZDB-GENE-030131-298]
Coordinates
chr19:9231089-9237081:+
Coord C1 exon
chr19:9231089-9231224
Coord A exon
chr19:9233789-9233988
Coord C2 exon
chr19:9236583-9237081
Length
200 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTTCAACTCAAGCAGATG
3' ss Score
4.31
5' ss Seq
GAGGTATAA
5' ss Score
5.96
Exon sequences
Seq C1 exon
AAGACGCGTCGGGAGGAGGGGCCGGAAGTGTTTTTTTCTTCACCGTTTAATAATTAGACTTGAGTGAGAATTTGGGATCCGAAGCGTCAACACGGATTTTCTTTGGGATAAACGGACAGGGCTGGCTGCACAAACG
Seq A exon
ATGCCACACTCCAGGCGGTATCCGTCCTCGGAGAGGGCCAGCCGCAGCAGCTACCAAGATCGATATAGAGAGCGGGACAGAGACAGAGATCGAGGAAGAAAACCTCGACATCGCCGCTCTCCAACCTATTCTTCCAGCAGTGAACGTGAGAGGAGAGCGAGAGGACACAGACAGGACACCGGCTATGCCAGATCCAGGAG
Seq C2 exon
CTACGACAACCGTTCTTCAGACCGCAGGCCATACGACAGACACTACGGCGAGAGCTACCGGCGCTTGGACCACAGCAGGGAACGGGACAGGGATCAAAACAGGGATCACCGGACGCCGAGCAACTACTACTCTCGCGACGCCTCGCCCAGCTACGACTTTCGCCGGGGACGCGACCGGGACCGCGAGGACTCATACCGGAGGAAAGGCAGCAGGCGTAAGCACAAACGAAGGCGGCGTAGAACCAGGTCCTATAGCGCATCCTCCTCGGTGAGTACTTCAATACCCAAGCCTGCTCTTTCCCTCCCCAAATCCCTTCTTCTCTCTCCACCTCTACACGCTCCTGTCTCTCTTTCCCCATAACGCTGTTCTTTTCCACAGCCCCAGGATTTGGTAAGTATGAACTCCTTTGTTTTATGTTCTTCTTTTTGTTGATGTTTTGTCTTTTTTTAAATAGTGATAGTCCATATGTTGGCTTTCAGTGTTTTATAATGGAATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062954-'0-4,'0-3,1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.992
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGGATAAACGGACAGGGC
R:
CGAGGAGGATGCGCTATAGGA
Band lengths:
303-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]